Databases, Protein
Research News and Information

Monday, November 23, 2009

Combining interface core and whole interface descriptors in postscan processing of protein-protein docking models.

30 Oct 2009 Computational protein-protein docking scans commonly produce correct and nearly correct interaction models, but sometimes these models are ranked low. We present here postscan processing procedures that dramatically enhance the distinction between ... Read more...

Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins.

29 Sep 2009 Repeat proteins contain short, tandem arrays of simple structural motifs (20-40 aa). These stack together to form nonglobular structures that are stabilized by short-range interactions from residues close in primary sequence. Unlike globular ... Read more...

Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.

29 Sep 2009 The prediction of 1D structural properties of proteins is an important step toward the prediction of protein structure and function, not only in the ab initio case but also when homology information to known structures is available. Despite this the ... Read more...

Latest indexed articles for 'Databases, Protein'

These are the very latest articles for this heading:

• Combining interface core and whole interface descriptors in postscan processing of protein-protein docking models. 30 Oct 2009
• Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins. 29 Sep 2009
• Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information. 29 Sep 2009
• Prediction of protein-glucose binding sites using support vector machines. 29 Sep 2009
• Automated docking screens: a feasibility study. 22 Sep 2009
• ZifBASE: a database of zinc finger proteins and associated resources. 7 Sep 2009
• Multiscale generalized born modeling of ligand binding energies for virtual database screening. Sep 2009
• Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments. 30 Aug 2009
• The continuity of protein structure space is an intrinsic property of proteins. 30 Aug 2009
• Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database. 30 Aug 2009
• A MS data search method for improved 15N-labeled protein identification. 30 Aug 2009
• Profiling MS proteomics data using smoothed non-linear energy operator and Bayesian additive regression trees. 30 Aug 2009
• LC-MS/MS as an alternative for SDS-PAGE in blue native analysis of protein complexes. 30 Aug 2009
• Toward an "omic" physiopathology of reactive chemicals: thirty years of mass spectrometric study of the protein adducts with endogenous and xenobiotic compounds. 30 Aug 2009
• Pushing structural information into the yeast interactome by high-throughput protein docking experiments. 26 Aug 2009
• FLORA: a novel method to predict protein function from structure in diverse superfamilies. 26 Aug 2009
• Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo. 26 Aug 2009
• Computation of conformational coupling in allosteric proteins. 26 Aug 2009
• Correlating protein function and stability through the analysis of single amino acid substitutions. 25 Aug 2009
• An integrated approach to the interpretation of single amino acid polymorphisms within the framework of CATH and Gene3D. 25 Aug 2009

See a longer list of these articles.

Technical information about 'Databases, Protein'

Definition: DATABASES containing information about PROTEINS such as AMINO ACID SEQUENCE; PROTEIN CONFORMATION; and other properties.

Descriptor UI: D030562

Alternative terms: Databases, Protein; Database, Protein; Protein Database; Protein Databases; SWISS-PROT; SWISS PROT; SwissProt; Protein Sequence Databases; Database, Protein Sequence; Databases, Protein Sequence; Protein Sequence Database; Sequence Database, Protein; Sequence Databases, Protein; Databases, Amino Acid Sequence; Amino Acid Sequence Databases; Protein Structure Databases; Database, Protein Structure; Databases, Protein Structure; Protein Structure Database; Structure Database, Protein; Structure Databases, Protein;

Allowable Qualifiers: classification; economics; history; legislation & jurisprudence; standards; supply & distribution; trends; utilization; statistics & numerical data; ethics;

Tree Number: L01.470.750.750.325.710; L01.700.508.300.188.400.325.710;

History Note: 2002