Sequence Analysis, Protein - Methods
Research News and Information

Sunday, November 22, 2009

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences.

31 Aug 2009 BACKGROUND: Functional profiling is a key technique to characterize and compare the functional potential of entire genomes. The estimation of profiles according to an assignment of sequences to functional categories is a computationally expensive ... Read more...

The ABRF Edman Sequencing Research Group 2008 Study: investigation into homopolymeric amino acid N-terminal sequence tags and their effects on automated Edman degradation.

30 Aug 2009 The Edman Sequence Research Group (ESRG) of the Association of Biomolecular Resource designs and executes interlaboratory studies investigating the use of automated Edman degradation for protein and peptide analysis. In 2008, the ESRG enlisted the ... Read more...

Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing.

30 Jul 2009 We report on a new algorithm for combining the information from several mass spectra of the same peptide. The algorithm automatically learns peptide fragmentation patterns, so that it can handle spectra from any instrument and fragmentation ... Read more...

Latest indexed articles for 'Sequence Analysis, Protein - Methods'

These are the very latest articles for this heading:

• UFO: a web server for ultra-fast functional profiling of whole genome protein sequences. 31 Aug 2009
• The ABRF Edman Sequencing Research Group 2008 Study: investigation into homopolymeric amino acid N-terminal sequence tags and their effects on automated Edman degradation. 30 Aug 2009
• Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing. 30 Jul 2009
• A bayesian approach to protein inference problem in shotgun proteomics. 30 Jul 2009
• N-terminal sequence analysis of proteins and peptides. 30 Jul 2009
• Clustering-based approach for predicting motif pairs from protein interaction data. 30 Jul 2009
• CRYSTALP2: sequence-based protein crystallization propensity prediction. 29 Jul 2009
• Enzyme classification with peptide programs: a comparative study. 22 Jul 2009
• PCI-SS: MISO dynamic nonlinear protein secondary structure prediction. 15 Jul 2009
• Dereplication and de novo sequencing of nonribosomal peptides. 11 Jul 2009
• Sequence-based analysis of protein energy landscapes reveals nonuniform thermal adaptation within the proteome. 8 Jul 2009
• Error statistics of hidden Markov model and hidden Boltzmann model results. 7 Jul 2009
• Iterative refinement of structure-based sequence alignments by Seed Extension. 7 Jul 2009
• PDA: an automatic and comprehensive analysis program for protein-DNA complex structures. 5 Jul 2009
• RBT-GA: a novel metaheuristic for solving the Multiple Sequence Alignment problem. 5 Jul 2009
• Prediction of DNA-binding residues from protein sequence information using random forests. 5 Jul 2009
• A new learning paradigm: learning using privileged information. Jul 2009
• Sequencing of peptide-derived Amadori products by the electron capture dissociation method. 29 Jun 2009
• Dynamic programming algorithms and grammatical modeling for protein beta-sheet prediction. 29 Jun 2009
• Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets. 29 Jun 2009

See a longer list of these articles.

Technical information about 'Sequence Analysis, Protein'

Definition: A process that includes the determination of an amino acid sequence of a protein (or peptide, oligopeptide or peptide fragment) and the information analysis of the sequence.

Descriptor UI: D020539

Alternative terms: Sequence Analysis, Protein; Analyses, Protein Sequence; Analysis, Protein Sequence; Protein Sequence Analyses; Sequence Analyses, Protein; Amino Acid Sequence Analysis; Sequence Analysis, Peptide; Protein Sequence Analysis; Sequence Analyses, Amino Acid; Sequence Analysis, Amino Acid; Amino Acid Sequence Analyses; Peptide Sequence Analysis; Analyses, Peptide Sequence; Analysis, Peptide Sequence; Peptide Sequence Analyses; Sequence Analyses, Peptide; Sequence Determination, Protein; Protein Sequence Determination; Protein Sequence Determinations; Sequence Determinations, Protein; Sequence Determinations, Amino Acid; Peptide Sequence Determination; Peptide Sequence Determinations; Sequence Determination, Peptide; Sequence Determinations, Peptide; Sequence Determination, Amino Acid; Amino Acid Sequence Determination; Amino Acid Sequence Determinations;

Allowable Qualifiers: classification; economics; history; instrumentation; methods; standards; trends; utilization; veterinary; statistics & numerical data; ethics;

Tree Number: E05.393.760.705;

History Note: 2000

Technical Notes: coord with specific protein (or protein group or peptide) with /chem; DF: SEQ ANAL PROTEIN