Sequence Analysis
Research News and Information

Monday, November 23, 2009

HMGA2-NFIB fusion in a pediatric intramuscular lipoma: a novel case of NFIB alteration in a large deep-seated adipocytic tumor.

30 Oct 2009 Lipomas are frequently characterized by aberrations of the 12q13 approximately q15 chromosomal region and often by rearrangements of the HMGA2 gene. These rearrangements include the formation of chimeric genes that fuse the 5' region of HMGA2 with a ... Read more...

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.

25 Aug 2009 BACKGROUND: The automated retrieval and integration of information about protein point mutations in combination with structure, domain and interaction data from literature and databases promises to be a valuable approach to study structure-function ... Read more...

A tutorial of techniques for improving standard Hidden Markov Model algorithms.

30 Jul 2009 In this tutorial, we discuss two main algorithms for Hidden Markov Models or HMMs: the Viterbi algorithm and the expectation phase of the Baum-Welch algorithm, and we describe ways to improve their naïve implementations. For the Baum-Welch algorithm ... Read more...

Latest indexed articles for 'Sequence Analysis'

These are the very latest articles for this heading:

• HMGA2-NFIB fusion in a pediatric intramuscular lipoma: a novel case of NFIB alteration in a large deep-seated adipocytic tumor. 30 Oct 2009
• Keeping genes out of terrorists' hands. Sep 2009
• Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. 25 Aug 2009
• [Next generation sequencing] 30 Jul 2009
• [Genome-wide analysis of chromatin and transcription factor by ChIP-seq] 30 Jul 2009
• [Introduction: next-generation DNA sequencing and bioinformatics] 30 Jul 2009
• A tutorial of techniques for improving standard Hidden Markov Model algorithms. 30 Jul 2009
• Biochemical characterization and transcriptional analysis of the epoxide hydrolase from white-rot fungus Phanerochaete chrysosporium. 30 Jul 2009
• Phenotypic and genotypic correction of WASP gene mutation in Wiskott-Aldrich syndrome by unrelated cord blood stem cell transplantation. 28 Jul 2009
• Functional elements in the minimal promoter of the human proton-coupled folate transporter. 26 Jul 2009
• A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences. 29 Jun 2009
• Diagnosis of bacteremia in whole-blood samples by use of a commercial universal 16S rRNA gene-based PCR and sequence analysis. 29 Jun 2009
• The distribution of Elongation Factor-1 Alpha (EF-1alpha), Elongation Factor-Like (EFL), and a non-canonical genetic code in the ulvophyceae: discrete genetic characters support a consistent phylogenetic framework. 29 Jun 2009
• Characterization of RPO B gene for detection of rifampicin drug resistance by SSCP and sequence analysis. 29 Jun 2009
• A new distance measure for model-based sequence clustering. 29 Jun 2009
• Tracking the transmission routes of genogroup II noroviruses in suspected food-borne or environmental outbreaks of gastroenteritis through sequence analysis of the P2 domain. 29 Jun 2009
• Maximum-likelihood model averaging to profile clustering of site types across discrete linear sequences. 24 Jun 2009
• Managing and analyzing next-generation sequence data. 24 Jun 2009
• Aromatic amino acids as stepping stones in charge transfer in respiratory complex I: an unusual mechanism deduced from atomistic theory and bioinformatics. 15 Jun 2009
• The Mycoplasma conjunctivae genome sequencing, annotation and analysis. 14 Jun 2009

See a longer list of these articles.

Technical information about 'Sequence Analysis'

Definition: A multistage process that includes the determination of a sequence (protein, carbohydrate, etc.), its fragmentation and analysis, and the interpretation of the resulting sequence information.

Descriptor UI: D017421

Alternative terms: Sequence Analysis; Analysis, Sequence; Analyses, Sequence; Sequence Analyses; Sequence Determinations; Determinations, Sequence; Sequence Determination; Determination, Sequence;

Allowable Qualifiers: classification; economics; history; instrumentation; methods; standards; trends; utilization; veterinary; statistics & numerical data; ethics;

Tree Number: E05.393.760;

History Note: 93

Technical Notes: GEN or unspecified; prefer specifics; DF: SEQ ANAL